Student attendance data management is important in the learning process in Universitas Muhammadiyah Yogyakarta. A good data management not only simplifies the lecture attendance process but also ensure a well-organized data administration. The lack of discipline from both the students and the lecturers in the teaching process especially in taking attendance will result in the mismatch between the attendance data and the scheduled lecture. The objective of this research is to design and develop a token-based attendance management system. This system will ease the lecturer in managing the students’ attendance, thus creating an attendance system that is administratively well-organized. Based on the result of black box testing and real testing done after the researcher tried out the online attendance application, it can be inferred that this online attendance application can be used by lecturers to manage students’ attendance. By using this application, students can also confirm their attendance using the token. This is proven by the average percentage of the test result that reaches above 90%